Appendix to Baer, C.F. 1999. Genetics 152: 653-659.

Appendix to
Baer, C.F. 1999. Among-locus variation in F_st: fish, allozymes, and the Lewontin-Krakauer test revisited. Genetics 152: 653-659.

Abstract

Summary statistics for all data sets included in the analyses. Abbreviations are as follows:

ref = reference number (see references)
E[gf] = expected level of gene flow
n(pop) = number of populations included in a data set
n(loci) = number of loci included in a data set
F_st = unweighted mean F_st, averaged over all loci
k = L-K’s k calculated over all loci
n₂₀ = number of loci with expected heterozygosity greater than or equal to 0.2
F_st,20 = unweighted mean F_st averaged over loci w/ expected heterozygosity greater than or equal to 0.2
k₂₀ = L-K’s k calculated over loci w/ expected heterozygosity greater than or equal to 0.2.

Species for which authors did not include common names are identified by a * and the family is given in parentheses.

Species

Common name

ref

E[gf]

n(pop)

n(loci)

Fst

k

Acanthochromis polyacanthus

Damselfish

19

l

8

7

0.466

6.031

Acanthrochromis polyacanthus

Damselfish

20

m

19

7

0.514

5.757

Acanthurus triostegus

Surgeonfish

54

m

11

10

0.079

6.820

Agosia chrysogaster

* (Cyprinidae)

69

m

7

5

0.353

7.950

Alosa pseudoharengus

Great Lakes alewife

35

m

12

5

0.087

8.906

Amphipirion melanopus

Damselfish

20

m

7

8

0.122

3.334

Astyanax mexicanus

* (Characidae)

4

l

9

10

0.342

10.671

Campostoma anomalum

Shiner

32

l

16

7

0.246

9.384

Campostoma oligolepis

Shiner

14

l

4

6

0.158

2.729

Carcharhinus sorrah

Shark

48

h

9

5

0.001

16.000

Carcharhinus tilstoni

Shark

48

h

7

5

0.019

20.053

Catostomus santaanae

Santa Ana sucker

15

l

4

4

0.031

2.495

Chondrostoma lusitanicum

* (Cyprinidae)

3

l

6

8

0.263

7.104

Chromis atripectoralis

Damselfish

20

m

4

10

0.046

5.776

Chrysiptera leucopoma

Damselfish

47

m

3

4

0.425

1.558

Clinocottus analis

Sculpin

77

h

5

6

0.001

13.200

Cnidoglanis macrocephalus

Cobbler

5

h

13

5

0.252

4.346

Coregonus clupeaformis

Whitefish

9

l

6

8

0.100

6.132

Coregonus lavaretus

Whitefish

8

l

5

5

0.303

3.888

Craterocephalus capreoli

* (Atherinidae)

40

h

17

3

0.167

18.358

Cynoscion nebulosus

Spotted seatrout

41

h

12

6

0.011

4.063

Cyprinodon bovinus

Pupfish

22

m

5

4

0.017

1.479

Cyprinodon elegans

Leon Springs pupfish

22

m

7

5

0.285

0.547

Cyprinodon pecosensis

Pecos pupfish

22

m

6

4

0.057

1.231

Dascyllus aruanus

Damselfish

53

h

13

12

0.015

5.566

Epinephelus multinotatus

Rankin cod

39

h

6

6

0.011

8.145

Etheostoma blennioides

Darter

32

l

16

6

0.067

6.234

Etheostoma caeruleum

Darter

32

l

13

5

0.403

19.462

Eupomacentrus partitus

Bicolor damselfish

46

h

4

8

0.073

15.410

Eutropius niloticus

Nile catfish

1

m

4

15

0.082

0.370

Floridichthys carpio

Goldspotted killifish

21

m

8

11

0.164

10.654

Floridichthys polyommus

Ocellated killifish

21

m

5

12

0.184

5.456

Fundulus kansae

Plains killifish

13

l

2

4

0.219

0.482

Gadus morhua

Atlantic cod

55

h

6

10

0.008

5.851

Galaxias brevipinnis

* (Galaxiidae)

2

m

7

4

0.032

3.348

Galaxias maculatus

* (Galaxiidae)

2

m

6

6

0.015

2.577

Galaxias paucispondylus

* (Galaxiidae)

2

l

3

5

0.100

4.134

Galaxias vulgaris

* (Galaxiidae)

2

l

8

8

0.442

6.159

Gambusia holbrooki

Mosquitofish

33

l

88

22

0.135

49.066

Gambusia holbrooki

Mosquitofish

50

m

70

4

0.178

3.702

Gambusia holbrooki/affinis

Mosquitofish

49

l

8

10

0.490

2.507

Gasterosteus aculeatus

Threespine stickleback

30

l

16

13

0.469

9.198

Gibbonsia elegans

Kelpfish

67

h

5

13

0.027

32.301

Gibbonsia metzi

Kelpfish

67

h

3

11

0.004

13.719

Gibbonsia montereyensis

Kelpfish

67

h

4

11

0.006

14.182

Heterandria formosa

Least killifish

6

l

34

8

0.172

19.766

Heterandria formosa

Least killifish

7

m

16

4

0.060

43.486

Heterostichus rostratus

Kelpfish

67

h

5

10

0.054

23.320

Hippoglossoides platessoides

American plaice

68

h

7

6

0.008

5.345

Hoplostethus atlanticus

Orange roughy

24

m

2

11

0.010

1.326

Hyperoglyphe antarctica

Deepsea trevalla

11

h

6

16

0.008

4.444

Ilyodon sp.

* (Goodeidae)

29

m

8

12

0.043

5.134

Lates calcarifer

Barramundi perch

64

h

26

7

0.032

8.512

Lepomis macrochirus

Bluegill sunfish

26

m

5

4

0.033

1.837

Leporinus friderici

* (Anostomidae)

58

l

8

13

0.327

5.692

Lethrinus choerorynchus

Lesser spangled emperor

39

h

6

7

0.007

1.607

Lethrinus nebulosus

Spangled emperor

39

h

6

8

0.007

3.564

Meda fulgida

* (Cyprinidae)

69

l

4

5

0.306

1.958

Menidia beryllina

Silverside

38

m

10

8

0.297

8.069

Menidia menidia

Atlantic silverside

38

h

5

5

0.020

1.828

Menidia peninsulae

Silverside

38

h

8

6

0.197

16.472

Nemadactylus macropterus

Jackass morwong

23

h

8

8

0.007

5.286

Odontobutis obscura

Donko goby

60

l

12

12

0.517

3.614

Oligocottus maculosus

Sculpin

77

h

4

4

0.002

6.469

Oligocottus snyderi

Sculpin

77

h

8

6

0.003

12.768

Oncorhynchs mykiss

Steelhead

57

m

24

5

0.111

31.620

Oncorhynchus mykiss

Rainbow trout

18

m

18

12

0.077

31.740

Oncorhynchus nerka

Sockeye salmon

76

m

27

14

0.171

34.881

Ophiodon elongatus

Lingcod

37

h

13

9

0.003

32.966

Oreochromis niloticus

Nile tilapia

59

l

18

9

0.332

10.334

Oryzias latipes

Medaka

61

l

21

15

0.723

3.145

Phoxinus eos

Redbelly dace

70

l

18

12

0.097

29.028

Poecilia latipinna

Sailfin molly

71

m

25

26

0.045

23.778

Poecilia reticulata

Guppy

17

l

12

7

0.460

7.803

Poecilia reticulata

Guppy

65

l

6

6

0.471

2.126

Poeciliopsis monacha

* (Poeciliidae)

73

l

8

6

0.365

0.889

Polyodon spathula

Paddlefish

25

m

8

11

0.040

13.125

Pterocaesio chrysozona

Fusilier

20

m

6

8

0.012

6.777

Rhinichthys cataractae

Longnose dace

51

l

13

5

0.302

1.394

Salmo clarki clarki

Cutthroat trout

16

m

5

7

0.088

4.029

Salmo gairdneri

Rainbow trout

44

m

15

21

0.047

65.945

Salmo salar

Atlantic salmon

42

h

6

4

0.077

2.556

Salmo salar

Atlantic salmon

52

m

7

5

0.030

7.333

Salmo salar

Atlantic salmon

66

l

28

6

0.259

13.308

Salmo salar

Atlantic salmon

72

m

8

6

0.011

4.553

Salmo trutta

Brown trout

28

l

24

25

0.539

6.021

Salmo trutta

Brown trout

31

h

7

6

0.006

4.400

Salmo trutta

Brown trout

45

m

8

12

0.022

8.176

Salvelinus namaycush

Lake trout

36

m

19

7

0.195

15.663

Sardiniella aurita

Spanish sardine

75

h

7

6

0.021

3.427

Sciaenops ocellatus

Red drum

10

h

14

9

0.019

0.998

Sciaenops ocellatus

Red drum

56

h

15

4

0.020

1.605

Sebastes alutus

Pacific ocean perch

62

h

27

5

0.017

13.025

Solea vulgaris

Common sole

43

h

3

12

0.010

1.791

Stegastes fasciolatus

Pacific damselfish

63

h

7

9

0.004

13.807

Stegastes nigricans

Damselfish

20

m

6

10

0.130

5.195

Stizostedion vitreum

Walleye

27

m

5

5

0.150

9.812

Thunnus albacares

Yellowfin tuna

74

h

6

5

0.029

11.296

Thymallus arcticus

Arctic grayling

34

m

4

3

0.046

0.728

Thymallus thymallus

Grayling

12

m

9

9

0.364

7.341

Tiaroga cobitis

* (Cyprinidae)

69

l

6

4

0.260

2.109

Tilapia zillii

Tilapia

59

l

9

14

0.439

3.944

Species	Common name	n20	Fst,20	k20
Acanthochromis polyacanthus	Damselfish	6	0.614	2.902
Acanthrochromis polyacanthus	Damselfish	5	0.592	4.652
Acanthurus triostegus	Surgeonfish	8	0.094	4.654
Agosia chrysogaster	* (Cyprinidae)	2	0.788	0.300
Alosa pseudoharengus	Great Lakes alewife	2	0.164	1.731
Amphipirion melanopus	Damselfish	8	0.122	3.334
Astyanax mexicanus	* (Characidae)	6	0.472	6.057
Campostoma anomalum	Shiner	4	0.393	0.661
Campostoma oligolepis	Shiner	4	0.201	2.244
Carcharhinus sorrah	Shark	4	0.001	11.520
Carcharhinus tilstoni	Shark	3	0.029	14.476
Catostomus santaanae	Santa Ana sucker	3	0.030	3.901
Chondrostoma lusitanicum	* (Cyprinidae)	4	0.493	1.771
Chromis atripectoralis	Damselfish	8	0.053	5.236
Chrysiptera leucopoma	Damselfish	4	0.425	1.558
Clinocottus analis	Sculpin	2	0.001	8.000
Cnidoglanis macrocephalus	Cobbler	2	0.265	0.072
Coregonus clupeaformis	Whitefish	4	0.101	10.330
Coregonus lavaretus	Whitefish	2	0.384	3.993
Craterocephalus capreoli	* (Atherinidae)	1	.	.
Cynoscion nebulosus	Spotted seatrout	0	.	.
Cyprinodon bovinus	Pupfish	3	0.015	2.258
Cyprinodon elegans	Leon Springs pupfish	3	0.134	4.044
Cyprinodon pecosensis	Pecos pupfish	.	.	.
Dascyllus aruanus	Damselfish	3	.	.
Epinephelus multinotatus	Rankin cod	4	0.014	7.676
Etheostoma blennioides	Darter	3	0.074	9.679
Etheostoma caeruleum	Darter	2	0.965	0.032
Eupomacentrus partitus	Bicolor damselfish	4	0.129	10.001
Eutropius niloticus	Nile catfish	4	0.103	0.368
Floridichthys carpio	Goldspotted killifish	4	0.285	8.314
Floridichthys polyommus	Ocellated killifish	7	0.269	3.525
Fundulus kansae	Plains killifish	4	0.290	0.059
Gadus morhua	Atlantic cod	3	0.013	7.864
Galaxias brevipinnis	* (Galaxiidae)	.	.	.
Galaxias maculatus	* (Galaxiidae)	.	.	.
Galaxias paucispondylus	* (Galaxiidae)	.	.	.
Galaxias vulgaris	* (Galaxiidae)	4	0.663	2.207
Gambusia holbrooki	Mosquitofish	.	.	.
Gambusia holbrooki	Mosquitofish	4	0.178	3.702
Gambusia holbrooki/affinis	Mosquitofish	8	0.606	0.649
Gasterosteus aculeatus	Threespine stickleback	8	0.688	2.698
Gibbonsia elegans	Kelpfish	1	0.139	8.000
Gibbonsia metzi	Kelpfish	4	0.001	8.000
Gibbonsia montereyensis	Kelpfish	1	.	.
Heterandria formosa	Least killifish	3	0.270	1.901
Heterandria formosa	Least killifish	3	0.078	33.804
Heterostichus rostratus	Kelpfish	4	0.131	9.112
Hippoglossoides platessoides	American plaice	6	0.008	5.297
Hoplostethus atlanticus	Orange roughy	9	0.010	1.513
Hyperoglyphe antarctica	Deepsea trevalla	5	0.003	0.373
Ilyodon sp.	* (Goodeidae)	4	0.066	4.505
Lates calcarifer	Barramundi perch	3	0.039	8.650
Lepomis macrochirus	Bluegill sunfish	0	.	.
Leporinus friderici	* (Anostomidae)	8	0.494	1.835
Lethrinus choerorynchus	Lesser spangled emperor	3	0.006	4.723
Lethrinus nebulosus	Spangled emperor	4	0.006	4.575
Meda fulgida	* (Cyprinidae)	4	0.346	1.781
Menidia beryllina	Silverside	4	0.412	0.343
Menidia menidia	Atlantic silverside	2	0.014	0.653
Menidia peninsulae	Silverside	3	0.376	6.623
Nemadactylus macropterus	Jackass morwong	8	0.006	6.405
Odontobutis obscura	Donko goby	7	0.512	2.049
Oligocottus maculosus	Sculpin	1	.	.
Oligocottus snyderi	Sculpin	2	0.000	.
Oncorhynchs mykiss	Steelhead	3	0.163	21.009
Oncorhynchus mykiss	Rainbow trout	3	0.168	24.583
Oncorhynchus nerka	Sockeye salmon	5	0.234	13.815
Ophiodon elongatus	Lingcod	5	0.003	27.520
Oreochromis niloticus	Nile tilapia	5	0.363	12.994
Oryzias latipes	Medaka	7	0.747	0.768
Phoxinus eos	Redbelly dace	7	0.133	23.540
Poecilia latipinna	Sailfin molly	3	0.067	0.303
Poecilia reticulata	Guppy	3	0.722	0.948
Poecilia reticulata	Guppy	4	0.575	1.674
Poeciliopsis monacha	* (Poeciliidae)	5	0.407	0.404
Polyodon spathula	Paddlefish	4	0.067	11.312
Pterocaesio chrysozona	Fusilier	5	0.011	4.545
Rhinichthys cataractae	Longnose dace	4	0.263	0.671
Salmo clarki clarki	Cutthroat trout	7	0.088	4.029
Salmo gairdneri	Rainbow trout	9	0.028	2.135
Salmo salar	Atlantic salmon	2	0.087	4.916
Salmo salar	Atlantic salmon	3	0.007	4.635
Salmo salar	Atlantic salmon	3	0.393	3.298
Salmo salar	Atlantic salmon	3	0.015	3.453
Salmo trutta	Brown trout	8	0.656	1.918
Salmo trutta	Brown trout	8	0.025	9.072
Salmo trutta	Brown trout	5	0.005	4.843
Salvelinus namaycush	Lake trout	3	0.212	24.215
Sardiniella aurita	Spanish sardine	2	0.040	0.094
Sciaenops ocellatus	Red drum	3	0.024	0.293
Sciaenops ocellatus	Red drum	3	0.017	0.339
Sebastes alutus	Pacific ocean perch	3	0.015	12.644
Solea vulgaris	Common sole	4	0.024	0.720
Stegastes fasciolatus	Pacific damselfish	4	0.003	2.414
Stegastes nigricans	Damselfish	5	0.158	4.877
Stizostedion vitreum	Walleye	5	0.150	9.812
Thunnus albacares	Yellowfin tuna	4	0.033	10.924
Thymallus arcticus	Arctic grayling	2	0.057	0.395
Thymallus thymallus	Grayling	5	0.501	3.764
Tiaroga cobitis	* (Cyprinidae)	3	0.251	3.353
Tilapia zillii	Tilapia	6	0.647	1.863

References

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