Office: Biology 314
Phone: 9704913289
Education:
- Ph.D., University of Montana
- B.A., Wesleyan University
- Reed College
Website: https://funklab.colostate.edu/
Curriculum Vitae: View Curriculum Vitae
Google Scholar: View Google Scholar Profile
About
Our research is at the interface of conservation, genomics, ecology, and evolution. The Funk Lab strives to understand the ecological and evolutionary mechanisms that generate and maintain biodiversity, and how rapid global environmental change affects these processes. We address questions by integrating population genomics, quantitative field methods, controlled experiments, and computational analysis in a variety of taxonomic groups (amphibians, fish, stream insects, birds, mammals, reptiles, and terrestrial insects). Much of our research focuses on freshwater habitats, such as streams, rivers, ponds, wetlands, and lakes. Research in the Funk Lab has been funded by a diversity of agencies and organizations, including the US National Science Foundation, the US Fish and Wildlife Service, the US Geological Survey, the US Forest Service, the US Bureau of Land Management, the Department of Defense, Colorado Parks and Wildlife, The Nature Conservancy, The Moore Foundation, and the National Geographic Society. We are an inclusive and supportive lab that firmly believes that diverse people and perspectives strengthen our science, and enrich our lives.
An important dimension of our research program is conservation genomics, which harnesses population genetics theory and cutting-edge sequencing technology to address a variety of conservation questions. Our lab uses genomic approaches to inform conservation of many species of conservation concern by delineating conservation units, estimating effective population sizes, quantifying adaptive potential, etc., particularly in amphibians as part of AmphibiaGen. Chris is deeply involved in improving the integration of genomics into national and international conservation policy. At the national level, he works extensively with the US Fish and Wildlife Service to advise them how best to incorporate genetic considerations into US Endangered Species Act listing decisions. At the international level, he serves as a member of the IUCN Conservation Genetics Specialist Group, GEO BON Genetic Composition Working Group, and Coalition for Conservation Genetics to advance genetic targets in international conservation policy, most recently focusing on the Convention on Biological Diversity (CBD).
Climate change is the defining issue of our times. Increasing temperatures and extreme weather events are already impacting people, places, and nature, and these impacts will worsen for decades to come, even under the most optimistic greenhouse gas emission scenarios. A primary research focus of the Funk Lab is to understand taxonomic and spatial variation in vulnerability and resilience to climate change. By identifying which species and populations are most sensitive, we can target conservation efforts appropriately.
Publications
- “Conservation and the Genomics of Populations, 3rd edition” Allendorf FW, Funk WC, Aitken SN, Byrne M, Luikart G Oxford University Press, Oxford, UK, 2022
- “Multispecies pangenomes reveal a pervasive influence of population size on structural variants” Edwards SV, Fang B, Khost D, Kolyfetis GE, Cheek RG, DeRaad DA, Chen N, Fitzpatrick JW, McCormack JE, Funk WC, Ghalambor CK, Garrison E, Guarracino A, Li H, Sackton TB Science Science 390, eadw 1931, 2025
- “What can genome sequence data reveal about population viability?” Kardos M, Keller LF, Funk WC Molecular Ecology 34, e17608, 2025
- “Best practices for genetic and genomic data archiving” Leigh DM, Vandergast A, Hunter ME, Crandall E, Funk WC, Garroway CJ, Hoban S, Oyler-McCance SJ, Rellstab C, Segelbacher G, Schmidt C, Vázquez-Domínguez E, Paz-Vinas I Nature Ecology and Evolution 8, 1224-1232, 2024
- “Greater thermal plasticity related to increased climate variability among populations of tailed frogs with limited opportunity for behavioral thermoregulation” Cicchino AS, Ghalambor CK, Forester BR, Dunham JD, Funk WC Proceedings of the Royal Society B: Biological Sciences 291, 20241628, 2024
- “Multi-scale relationships in thermal limits within and between two cold-water frog specialists uncover different trends in physiological vulnerability” Cicchino AS, Shah AA, Forester BR, Dunham JB, Ghalambor CK, Funk WC Freshwater Biology 68, 1267-1278, 2023
- “Conservation genomics of an endangered montane amphibian reveals low population structure, low genomic diversity, and selection pressure from disease” Trumbo D, Hardy B, Crockett H, Muths E, Forester BR, Cheek RG, Zimmerman S, Corey-Rivas S, Bailey L, Funk WC Molecular Ecology 32, 6777-6795, 2023
- “Linking evolutionary potential to extinction risk: applications and future directions” Forester BR, Beever E, Darst C, Szymanski J, Funk WC Frontiers in Ecology and the Environment 20, 507-515, 2022
- “The crucial role of genome-wide genetic variation in conservation” Kardos M, Armstrong EE, Fitzpatrick SW, Hauser S, Hedrick PW, Miller J, Tallmon DA, Funk WC Proceedings of the National Academy of Sciences of the United States of America 118, e2104642118, 2021
- “Genomic and fitness consequences of genetic rescue in wild populations” Fitzpatrick SW, Bradburd GS, Kremer CT, Salerno PE, Angeloni LM, Funk WC Current Biology 30, 517-522, 2020
- “Improving conservation policy with genomics: A guide to integrating adaptive potential into U.S. Endangered Species Act decisions for conservation practitioners and geneticists” Funk WC, Forester BR, Converse SJ, Darst C, Morey S Conservation Genetics 20, 115-134, 2019
- “Narrow thermal tolerance and low dispersal drive higher speciation in tropical mountains” Polato NR, Gill BA, Shah AA, Gray MM, Casner KL, Barthelet A, Messer PW, Simmons MP, Guayasamin JM, Encalada AC, Kondratieff BC, Flecker AS, Thomas SA, Ghalambor CK, Poff NL, Funk WC, Zamudio KR Proceedings of the National Academy of Sciences of the United States of America 49, 12471-12476, 2018
- “Extreme streams: Species persistence mechanisms and evolutionary change in montane stream insect populations across a flood disturbance gradient” Poff NL, Larson EI, Salerno PE, Morton SG, Kondratieff BC, Flecker AS, Zamudio KR, Funk WC Ecology Letters 21, 425-525, 2018
- “Adaptive divergence despite strong genetic drift: genomic analysis of the evolutionary mechanisms causing genetic differentiation in the island fox (Urocyon littoralis)” Funk WC, Lovich RE, Hohenlohe PA, Hofman CA, Morrison SA, Sillett TS, Ghalambor CK, Maldonado JE, Rick TC, Day MD, Polato NR, Fitzpatrick SW, Coonan TJ, Crooks KR, Dillon A, Garcelon DK, King JL, Boser CL, Gould N, Andelt WF Molecular Ecology 25, 2176-2194, 2016
- “Genetic rescue to the rescue” Whiteley AR, Fitzpatrick SW, Funk WC, Tallmon DA Trends in Ecology and Evolution 30, 42-49, 2015
- “Harnessing genomics for delineating conservation units” Funk WC, McKay JK, Hohenlohe PA, Allendorf FW Trends in Ecology and Evolution 27, 489-496, 2012